Biomarkers found that could be drug targets against a deadly form of brain cancer

WASHINGTON – Biomarkers that could be targets for novel drugs to treat glioblastoma brain tumors have been identified by investigators at Georgetown Lombardi Comprehensive Cancer Center, providing hope for a cancer that is highly lethal.

Currently, the drug most often used to treat glioblastoma, temozolomide, is uniquely able to cross the blood/brain barrier to attack the tumor but resistance develops rapidly, and many patients do not survive for more than a year after diagnosis. This new finding provides early evidence that there may be a benefit in targeting specific alterations in cancer cells with newer agents once a patient’s tumor becomes resistant to temozolomide.

The finding appeared June 22, 2022, in Science Advances. (DOI: 10.1126/sciadv.abn3471)

“As a field, we have struggled to deal with the short-term effectiveness of temozolomide, as many of the drugs used successfully in other cancers are disappointing when they are subsequently tested in glioblastoma clinical trials. One way to deal with this problem is to learn enough about how we can target features that help drug-resistant glioblastoma survive,” says Rebecca B. Riggins, PhD, Associate Professor and Associate Director of Education and Training at Georgetown Lombardi and co-corresponding author of the study. “We focused on the details of how temozolomide damages DNA to help radiation treatments work better. Our team found that temozolomide-resistant glioblastoma relies on a protein called CLK2, and that inhibiting the activity of CLK2 could cause widespread confusion, leading to cancer cell death.”

The targets the researchers identified were alterations in a key structural component of both DNA and RNA, specifically in guanine, one of the four bases that comprise DNA. Modifications to guanine can ultimately have an impact on CLK2, which has been implicated in the aggressiveness of the tumor. Beyond identifying vulnerable modifications, the researchers were able to identify drugs that help stabilize RNA and could potentially slow or stop the resistance that typically develops to temozolomide.

Only about 5% of patients diagnosed with glioblastoma live for five years after diagnosis and median survival is a little over a year; survival rates haven’t changed much since the mid-1970s. Temozolomide (Temodar) has been the standard of care since 2005 in combination with surgery and radiation.

Temozolomide’s targeting of guanine also impacts structures that regulate key cancer-causing genes.  If these cancer-causing genes, called oncogenes, could be kept turned off, the drug might have a longer period of activity. Some of this knowledge was gleaned from studies in a neurogenerative disease, Amyotrophic Lateral Sclerosis (ALS), commonly known as Lou Gehrig’s disease. ALS has some features that are similar to glioblastoma, therefore they might also inform new strategies for glioblastoma treatment, the researchers theorized.

“Some of the mechanisms underlying neurodegenerative diseases appear to be relevant to temozolomide resistance in glioblastoma,” says Deanna M. Tiek, PhD, a F99/K00 fellow at the Northwestern University Feinberg School of Medicine and The Robert H. Lurie Comprehensive Cancer Center and co-corresponding author. Tiek was a PhD student in Riggins' lab when this research began. “This work demonstrates that inspiration and insight can come from places we might not have considered, and that it’s so important to take a risk, do the experiment, and see if you were right or not.”  

The investigators are now undertaking studies in small animal models, where they will test to see if the novel CLK2 inhibitor can efficiently enter the brain and shrink temozolomide-resistant glioblastoma. “We are also investigating whether other anti-cancer drugs that attack guanine and are commonly used in triple-negative breast cancer and colorectal cancer, for example, change RNA structures in a similar way, which could make CLK2 inhibition more effective in recurrent, drug-resistant forms of those cancers as well,” concludes Riggins.

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In addition to Riggins and Tiek, the other authors from Georgetown include Lu Jin, and Bassem R Haddad; Samuel A Goldlust at the John Theurer Cancer Center, Hackensack, New Jersey; Beril Erdogdu, Roham Razaghi, Norah Sadowski, Mihaela Pertea and Winston Timp at Johns Hopkins University, Baltimore, MD; Carla Alamillo-Ferrer, David H Drewry, Carrow I Wells, Julie E. Pickett and William J Zuercher at the University of North Carolina at Chapel Hill, NC; J Robert Hogg at the National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD; and Xiao Song, Anshika Goenka, Bo Hu, and Shi-Yuan Cheng at Northwestern University Feinberg School of Medicine, Chicago.

Timp has two patents (8,748,091 and 8,394,584) licensed to Oxford Nanopore. Goldlust has the following financial interests or consulting relationships related to his clinical practice, but these are not specific to this manuscript: Regional Cancer Care Associates (employee); COTA (stockholder); Boston Biomedical / SDP Oncology (consultant); Novocure (consultant, speaker’s bureau); Cornerstone Specialty Network (consultant); Cellevolve (consultant); Daiichi Sankyo (consultant); and Institutional support for clinical trial conduct. All other authors declare no potential conflict of interest.

Funding includes a Georgetown University Medical Center Dean for Research’s Toulmin Pilot Project Award, a Partners in Research Breakthrough Award, and funding from NIH grants P30 CA051008, R01 CA256481, K00 CA234799, T32 CA009686, R01 NS115403, R01 HG0105381, R44 TR001916-02 and 1U24 DK116204-01; the Malnati Brain Tumor Institute of Northwestern Medicine; The Caroline Fund; The Eshelman Institute for Innovation; UNC Lineberger Comprehensive Cancer Center; and PharmAlliance.

About Georgetown Lombardi Comprehensive Cancer Center
Georgetown Lombardi Comprehensive Cancer Center is designated by the National Cancer Institute (NCI) as a comprehensive cancer center. A part of Georgetown University Medical Center, Georgetown Lombardi is the only comprehensive cancer center in the Washington D.C. area. It serves as the research engine for MedStar Health, Georgetown University’s clinical partner. Georgetown Lombardi is also an NCI recognized consortium with John Theurer Cancer Center/Hackensack Meridian Health in Bergen County, New Jersey. The consortium reflects an integrated cancer research enterprise with scientists and physician-researchers from both locations. Georgetown Lombardi seeks to improve the diagnosis, treatment, and prevention of cancer through innovative basic, translational and clinical research, patient care, community education and outreach to service communities throughout the Washington region, while its consortium member John Theurer Cancer Center/Hackensack Meridian Health serves communities in northern New Jersey. Georgetown Lombardi is a member of the NCI Community Oncology Research Program (UG1CA239758). Georgetown Lombardi is supported in part by a National Cancer Institute Cancer Center Support Grant (P30CA051008). Connect with Georgetown Lombardi on Facebook (Facebook.com/GeorgetownLombardi) and Twitter (@LombardiCancer).