Understanding the genetic resistance to biotic stresses in peach (Prunus persica) and apricot (Prunus armeniaca) is crucial for sustainable fruit production. A comprehensive study was conducted using Genome-Wide Association Studies (GWAS) across multiple environments, identifying key genetic markers associated with resistance to seven major pests and diseases. This study uncovered genotype-by-environment interactions (G × E), highlighting the complexity of breeding for disease resistance in these crops. The results provide valuable insights into the genetic architecture of resistance, offering a solid foundation for marker-assisted selection (MAS) in future fruit tree breeding programs aimed at improving pest and disease tolerance.

Tanshinones are major bioactive components in Salvia miltiorrhiza and are widely used in cardiovascular therapies. However, their naturally low content limits pharmaceutical utilization. This study reveals a transcriptional regulatory module involving SmWRKY32, SmbHLH65, and SmbHLH85 that directly shapes tanshinone biosynthesis. The researchers demonstrate that SmbHLH65 and SmbHLH85 act as positive regulators promoting tanshinone accumulation, while SmWRKY32 functions as a suppressor by downregulating SmbHLH65. Overexpressing SmbHLH65 or SmbHLH85 significantly increases tanshinone levels, whereas silencing these factors decreases production. These findings uncover a coordinated gene–protein interaction network providing new molecular targets for metabolic engineering to enhance tanshinone yield.

Terpenoids are among the most pharmacologically valuable plant metabolites, yet their biosynthetic gene clusters in Euphorbiaceae have remained largely unexplored. This study establishes a comprehensive genome-wide identification framework and analyzes terpene gene clusters using multi-omics data. A total of 1824 candidate clusters were detected in seven Euphorbiaceae species, and 16 were confirmed as high-confidence terpene clusters after strict screening based on TPS/CYP pairing, copathway linkage, and coexpression patterns. Notably, casbene and casbene-derived diterpenoid gene clusters were identified, providing new clues to the biosynthesis of bioactive compounds such as neocembrene, ingenanes, and jatrophanes. This work lays a foundation for metabolic engineering and drug development linked to Euphorbiaceae terpenoids.